J4_7B5K_007

3D structure

PDB id

7B5K (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

7B5K|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7B5K_007 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0659

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7B5K|1|A|U|1313
7B5K|1|A|C|1314
*
7B5K|1|A|G|1338
7B5K|1|A|G|1339
7B5K|1|A|U|1340
7B5K|1|A|G|1341
7B5K|1|A|A|1342
7B5K|1|A|G|1343
*
7B5K|1|A|C|1404
7B5K|1|A|U|1405
*
7B5K|1|A|A|1597
7B5K|1|A|A|1598
7B5K|1|A|U|1599
7B5K|1|A|C|1600
7B5K|1|A|G|1601
7B5K|1|A|U|1602
7B5K|1|A|A|1603

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23