3D structure

PDB id
7B5K (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
7B5K|1|a|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7B5K_013 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.26
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7B5K|1|a|G|115
7B5K|1|a|A|116
7B5K|1|a|G|117
7B5K|1|a|U|118
7B5K|1|a|A|119
7B5K|1|a|A|120
7B5K|1|a|U|121
7B5K|1|a|G|122
*
7B5K|1|a|U|239
7B5K|1|a|G|240
*
7B5K|1|a|C|286
7B5K|1|a|U|287
7B5K|1|a|A|288
7B5K|1|a|G|289
*
7B5K|1|a|C|311
7B5K|1|a|C|312

Current chains

Chain a
16S rRNA

Nearby chains

Chain p
30S ribosomal protein S16
Chain q
30S ribosomal protein S17

Coloring options:


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