J4_7B7D_005

3D structure

PDB id

7B7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound to eEF3 and A/A- and P/P-tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

7B7D|1|LA|A|1452, 7B7D|1|LA|U|1455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7B7D_005 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1056

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7B7D|1|LA|C|1451
7B7D|1|LA|A|1452
7B7D|1|LA|A|1453
7B7D|1|LA|A|1454
7B7D|1|LA|U|1455
7B7D|1|LA|A|1456
7B7D|1|LA|U|1457
*
7B7D|1|LA|A|1475
7B7D|1|LA|G|1476
*
7B7D|1|LA|U|1877
7B7D|1|LA|G|1878
7B7D|1|LA|A|1879
7B7D|1|LA|U|1880
*
7B7D|1|LA|A|2352
7B7D|1|LA|G|2353

Current chains

Chain LA

25S rRNA

Nearby chains

Chain LR

60S ribosomal protein L17-A

Chain LZ

60S ribosomal protein L31-A

Chain Ln

60S ribosomal protein L19-A