J4_7BL4_001

3D structure

PDB id

7BL4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7BL4|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BL4_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1504

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7BL4|1|A|C|268
7BL4|1|A|C|269
*
7BL4|1|A|G|370
7BL4|1|A|A|371
7BL4|1|A|G|372
7BL4|1|A|U|373
7BL4|1|A|A|374
7BL4|1|A|G|375
*
7BL4|1|A|U|399
7BL4|1|A|G|400
7BL4|1|A|A|401
7BL4|1|A|A|402
7BL4|1|A|U|403
7BL4|1|A|A|404
7BL4|1|A|U|405
7BL4|1|A|G|406
*
7BL4|1|A|C|421
7BL4|1|A|A|422
7BL4|1|A|A|423
7BL4|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28