J4_7BL5_001

3D structure

PDB id

7BL5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S-ObgE particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7BL5|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BL5_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1597

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7BL5|1|A|C|268
7BL5|1|A|C|269
*
7BL5|1|A|G|370
7BL5|1|A|A|371
7BL5|1|A|G|372
7BL5|1|A|U|373
7BL5|1|A|A|374
7BL5|1|A|G|375
*
7BL5|1|A|U|399
7BL5|1|A|G|400
7BL5|1|A|A|401
7BL5|1|A|A|402
7BL5|1|A|U|403
7BL5|1|A|A|404
7BL5|1|A|U|405
7BL5|1|A|G|406
*
7BL5|1|A|C|421
7BL5|1|A|A|422
7BL5|1|A|A|423
7BL5|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28