3D structure

PDB id
7BOD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state M (body domain)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.88 Å

Loop

Sequence
GAG*CAUAACG*CCAAAG*UGC
Length
19 nucleotides
Bulged bases
7BOD|1|A|C|183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7BOD_002 not in the Motif Atlas
Homologous match to J4_5J7L_002
Geometric discrepancy: 0.1126
The information below is about J4_5J7L_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_01665.1
Basepair signature
cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
Number of instances in this motif group
1

Unit IDs

7BOD|1|A|G|142
7BOD|1|A|A|143
7BOD|1|A|G|144
*
7BOD|1|A|C|178
7BOD|1|A|A|179
7BOD|1|A|U|180
7BOD|1|A|A|181
7BOD|1|A|A|182
7BOD|1|A|C|183
7BOD|1|A|G|184
*
7BOD|1|A|C|193
7BOD|1|A|C|194
7BOD|1|A|A|195
7BOD|1|A|A|196
7BOD|1|A|A|197
7BOD|1|A|G|198
*
7BOD|1|A|U|219
7BOD|1|A|G|220
7BOD|1|A|C|221

Current chains

Chain A
16S rRNA (body domain of 30S subunit)

Nearby chains

Chain T
30S ribosomal protein S20

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1609 s
Application loaded.