J4_7BOE_002

3D structure

PDB id

7BOE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state M (Consensus refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7BOE|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BOE_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1126

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7BOE|1|A|G|142
7BOE|1|A|A|143
7BOE|1|A|G|144
*
7BOE|1|A|C|178
7BOE|1|A|A|179
7BOE|1|A|U|180
7BOE|1|A|A|181
7BOE|1|A|A|182
7BOE|1|A|C|183
7BOE|1|A|G|184
*
7BOE|1|A|C|193
7BOE|1|A|C|194
7BOE|1|A|A|195
7BOE|1|A|A|196
7BOE|1|A|A|197
7BOE|1|A|G|198
*
7BOE|1|A|U|219
7BOE|1|A|G|220
7BOE|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20