J4_7BOF_001

3D structure

PDB id

7BOF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state I (body domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7BOF|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BOF_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2679

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7BOF|1|A|G|115
7BOF|1|A|A|116
7BOF|1|A|G|117
7BOF|1|A|U|118
7BOF|1|A|A|119
7BOF|1|A|A|120
7BOF|1|A|U|121
7BOF|1|A|G|122
*
7BOF|1|A|U|239
7BOF|1|A|G|240
*
7BOF|1|A|C|286
7BOF|1|A|U|287
7BOF|1|A|A|288
7BOF|1|A|G|289
*
7BOF|1|A|C|311
7BOF|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17