J4_7BOH_001

3D structure

PDB id

7BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7BOH|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BOH_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2209

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7BOH|1|A|G|115
7BOH|1|A|A|116
7BOH|1|A|G|117
7BOH|1|A|U|118
7BOH|1|A|A|119
7BOH|1|A|A|120
7BOH|1|A|U|121
7BOH|1|A|G|122
*
7BOH|1|A|U|239
7BOH|1|A|G|240
*
7BOH|1|A|C|286
7BOH|1|A|U|287
7BOH|1|A|A|288
7BOH|1|A|G|289
*
7BOH|1|A|C|311
7BOH|1|A|C|312

Current chains

Chain A

RNA (1527-MER)

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17