J4_7BOH_002

3D structure

PDB id

7BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complete Bacterial 30S ribosomal subunit assembly complex state E (+RbfA)(Consensus Refinement)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7BOH|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BOH_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0934

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7BOH|1|A|G|142
7BOH|1|A|A|143
7BOH|1|A|G|144
*
7BOH|1|A|C|178
7BOH|1|A|A|179
7BOH|1|A|U|180
7BOH|1|A|A|181
7BOH|1|A|A|182
7BOH|1|A|C|183
7BOH|1|A|G|184
*
7BOH|1|A|C|193
7BOH|1|A|C|194
7BOH|1|A|A|195
7BOH|1|A|A|196
7BOH|1|A|A|197
7BOH|1|A|G|198
*
7BOH|1|A|U|219
7BOH|1|A|G|220
7BOH|1|A|C|221

Current chains

Chain A

RNA (1527-MER)

Nearby chains

Chain T

30S ribosomal protein S20