3D structure

PDB id
7BOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
7BOI|1|A|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7BOI_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.2824
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

7BOI|1|A|G|115
7BOI|1|A|A|116
7BOI|1|A|G|117
7BOI|1|A|U|118
7BOI|1|A|A|119
7BOI|1|A|A|120
7BOI|1|A|U|121
7BOI|1|A|G|122
*
7BOI|1|A|U|239
7BOI|1|A|G|240
*
7BOI|1|A|C|286
7BOI|1|A|U|287
7BOI|1|A|A|288
7BOI|1|A|G|289
*
7BOI|1|A|C|311
7BOI|1|A|C|312

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16
Chain Q
30S ribosomal protein S17

Coloring options:


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