J4_7BOI_002

3D structure

PDB id

7BOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

7BOI|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BOI_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0982

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7BOI|1|A|G|142
7BOI|1|A|A|143
7BOI|1|A|G|144
*
7BOI|1|A|C|178
7BOI|1|A|A|179
7BOI|1|A|U|180
7BOI|1|A|A|181
7BOI|1|A|A|182
7BOI|1|A|C|183
7BOI|1|A|G|184
*
7BOI|1|A|C|193
7BOI|1|A|C|194
7BOI|1|A|A|195
7BOI|1|A|A|196
7BOI|1|A|A|197
7BOI|1|A|G|198
*
7BOI|1|A|U|219
7BOI|1|A|G|220
7BOI|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20