J4_7BV8_001

3D structure

PDB id

7BV8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 50S ribosomal subunit from RrmJ knock out E.coli strain

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7BV8|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7BV8_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1154

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7BV8|1|A|C|268
7BV8|1|A|C|269
*
7BV8|1|A|G|370
7BV8|1|A|A|371
7BV8|1|A|G|372
7BV8|1|A|U|373
7BV8|1|A|A|374
7BV8|1|A|G|375
*
7BV8|1|A|U|399
7BV8|1|A|G|400
7BV8|1|A|A|401
7BV8|1|A|A|402
7BV8|1|A|U|403
7BV8|1|A|A|404||A
7BV8|1|A|U|405
7BV8|1|A|G|406
*
7BV8|1|A|C|421
7BV8|1|A|A|422
7BV8|1|A|A|423
7BV8|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28