J4_7CHD_001
3D structure
- PDB id
- 7CHD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- AtaT complexed with acetyl-methionyl-tRNAfMet
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.804 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7CHD|1|I|4SU|8, 7CHD|1|I|U|47, 7CHD|1|I|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CHD_001 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.2316
- The information below is about J4_7VNV_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
7CHD|1|I|G|7
7CHD|1|I|4SU|8
7CHD|1|I|G|9
7CHD|1|I|G|10
*
7CHD|1|I|C|25
7CHD|1|I|G|26
7CHD|1|I|U|27
*
7CHD|1|I|A|43
7CHD|1|I|A|44
7CHD|1|I|G|45
7CHD|1|I|A|46
7CHD|1|I|U|47
7CHD|1|I|C|48
7CHD|1|I|G|49
*
7CHD|1|I|C|65
7CHD|1|I|C|66
Current chains
- Chain I
- RNA (77-MER)
Nearby chains
- Chain C
- N-acetyltransferase domain-containing protein
- Chain F
- N-acetyltransferase domain-containing protein
- Chain G
- N-acetyltransferase domain-containing protein
Coloring options: