J4_7CPJ_002

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7CPJ|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7CPJ_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.133

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7CPJ|1|A|C|268
7CPJ|1|A|C|269
*
7CPJ|1|A|G|370
7CPJ|1|A|A|371
7CPJ|1|A|G|372
7CPJ|1|A|U|373
7CPJ|1|A|A|374
7CPJ|1|A|G|375
*
7CPJ|1|A|U|399
7CPJ|1|A|G|400
7CPJ|1|A|A|401
7CPJ|1|A|A|402
7CPJ|1|A|U|403
7CPJ|1|A|A|404
7CPJ|1|A|U|405
7CPJ|1|A|G|406
*
7CPJ|1|A|C|421
7CPJ|1|A|A|422
7CPJ|1|A|A|423
7CPJ|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28