J4_7CPJ_009

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7CPJ|1|A|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7CPJ_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.091

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

7CPJ|1|A|C|1833
7CPJ|1|A|U|1834
7CPJ|1|A|2MG|1835
*
7CPJ|1|A|C|1905
7CPJ|1|A|G|1906
*
7CPJ|1|A|C|1924
7CPJ|1|A|C|1925
7CPJ|1|A|U|1926
7CPJ|1|A|A|1927
7CPJ|1|A|A|1928
7CPJ|1|A|G|1929
7CPJ|1|A|G|1930
7CPJ|1|A|U|1931
7CPJ|1|A|A|1932
7CPJ|1|A|G|1933
*
7CPJ|1|A|C|1967
7CPJ|1|A|G|1968
7CPJ|1|A|A|1969
7CPJ|1|A|A|1970
7CPJ|1|A|U|1971
7CPJ|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 9

Transfer RNA; tRNA

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA