J4_7CPJ_012

3D structure

PDB id

7CPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ycbZ-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

7CPJ|1|a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7CPJ_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2509

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7CPJ|1|a|G|115
7CPJ|1|a|A|116
7CPJ|1|a|G|117
7CPJ|1|a|U|118
7CPJ|1|a|A|119
7CPJ|1|a|A|120
7CPJ|1|a|U|121
7CPJ|1|a|G|122
*
7CPJ|1|a|U|239
7CPJ|1|a|G|240
*
7CPJ|1|a|C|286
7CPJ|1|a|U|287
7CPJ|1|a|A|288
7CPJ|1|a|G|289
*
7CPJ|1|a|C|311
7CPJ|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17