J4_7CPU_003

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

7CPU|1|L5|A|2123, 7CPU|1|L5|U|2126, 7CPU|1|L5|U|2582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|2122
7CPU|1|L5|A|2123
7CPU|1|L5|A|2124
7CPU|1|L5|A|2125
7CPU|1|L5|U|2126
7CPU|1|L5|A|2127
7CPU|1|L5|U|2128
*
7CPU|1|L5|A|2146
7CPU|1|L5|G|2147
7CPU|1|L5|G|2148
*
7CPU|1|L5|C|2578
7CPU|1|L5|A|2579
7CPU|1|L5|U|2580
7CPU|1|L5|G|2581
7CPU|1|L5|U|2582
7CPU|1|L5|U|2583
*
7CPU|1|L5|A|3513
7CPU|1|L5|G|3514

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31