J4_7CPU_006

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

7CPU|1|L5|A|2450

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|G|2372
7CPU|1|L5|G|2373
*
7CPU|1|L5|U|2391
7CPU|1|L5|G|2392
7CPU|1|L5|U|2393
7CPU|1|L5|G|2394
7CPU|1|L5|A|2395
7CPU|1|L5|A|2396
*
7CPU|1|L5|U|2446
7CPU|1|L5|G|2447
7CPU|1|L5|G|2448
7CPU|1|L5|A|2449
7CPU|1|L5|A|2450
7CPU|1|L5|A|2451
7CPU|1|L5|G|2452
*
7CPU|1|L5|U|2472
7CPU|1|L5|C|2473

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38