J4_7CPU_008
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 7CPU|1|L5|U|3430, 7CPU|1|L5|U|3475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CPU_008 not in the Motif Atlas
- Homologous match to J4_8P9A_018
- Geometric discrepancy: 0.1261
- The information below is about J4_8P9A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
7CPU|1|L5|C|3353
7CPU|1|L5|U|3354
7CPU|1|L5|G|3355
*
7CPU|1|L5|C|3409
7CPU|1|L5|G|3410
*
7CPU|1|L5|C|3428
7CPU|1|L5|U|3429
7CPU|1|L5|U|3430
7CPU|1|L5|A|3431
7CPU|1|L5|A|3432
7CPU|1|L5|G|3433
7CPU|1|L5|G|3434
7CPU|1|L5|U|3435
7CPU|1|L5|A|3436
7CPU|1|L5|G|3437
*
7CPU|1|L5|U|3471
7CPU|1|L5|G|3472
7CPU|1|L5|A|3473
7CPU|1|L5|A|3474
7CPU|1|L5|U|3475
7CPU|1|L5|G|3476
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain S6
- Transfer RNA; tRNA
Coloring options: