J4_7CPU_010

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

7CPU|1|L5|A|3887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7CPU_010 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.175

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|C|3884
7CPU|1|L5|U|3885
7CPU|1|L5|A|3886
7CPU|1|L5|A|3887
7CPU|1|L5|G|3888
*
7CPU|1|L5|U|3942
7CPU|1|L5|U|3943
7CPU|1|L5|G|3944
7CPU|1|L5|A|3945
7CPU|1|L5|U|3946
*
7CPU|1|L5|A|3970
7CPU|1|L5|C|3971
7CPU|1|L5|C|3972
*
7CPU|1|L5|G|3981
7CPU|1|L5|G|3982
7CPU|1|L5|G|3983

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a