J4_7CPU_011

3D structure

PDB id

7CPU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse kidney

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

7CPU|1|L5|U|4330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPU|1|L5|G|4240
7CPU|1|L5|U|4241
7CPU|1|L5|A|4242
7CPU|1|L5|A|4243
*
7CPU|1|L5|U|4273
7CPU|1|L5|C|4274
*
7CPU|1|L5|G|4329
7CPU|1|L5|U|4330
7CPU|1|L5|G|4331
*
7CPU|1|L5|C|4365
7CPU|1|L5|G|4366
7CPU|1|L5|C|4367
7CPU|1|L5|C|4368

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23