J4_7CPU_014
3D structure
- PDB id
- 7CPU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse kidney
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7CPU|1|S6|U|9, 7CPU|1|S6|U|47, 7CPU|1|S6|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CPU_014 not in the Motif Atlas
- Homologous match to J4_5AXM_001
- Geometric discrepancy: 0.2573
- The information below is about J4_5AXM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_58311.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
7CPU|1|S6|G|8
7CPU|1|S6|U|9
7CPU|1|S6|G|10
7CPU|1|S6|G|11
*
7CPU|1|S6|U|25
7CPU|1|S6|G|26
7CPU|1|S6|C|27
*
7CPU|1|S6|G|43
7CPU|1|S6|A|44
7CPU|1|S6|G|45
7CPU|1|S6|G|46
7CPU|1|S6|U|47
7CPU|1|S6|C|48
7CPU|1|S6|G|49
*
7CPU|1|S6|C|65
7CPU|1|S6|C|66
Current chains
- Chain S6
- Met-tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lo
- 60S ribosomal protein L36a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: