J4_7CPV_004
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 7CPV|1|L5|C|2194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CPV_004 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0725
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7CPV|1|L5|G|2163
7CPV|1|L5|G|2164
7CPV|1|L5|U|2165
7CPV|1|L5|U|2166
7CPV|1|L5|C|2167
*
7CPV|1|L5|G|2191
7CPV|1|L5|G|2192
7CPV|1|L5|U|2193
7CPV|1|L5|C|2194
7CPV|1|L5|A|2195
7CPV|1|L5|G|2196
*
7CPV|1|L5|U|2295
7CPV|1|L5|C|2296
*
7CPV|1|L5|G|2531
7CPV|1|L5|G|2532
7CPV|1|L5|C|2533
7CPV|1|L5|C|2534
7CPV|1|L5|G|2535
7CPV|1|L5|U|2536
7CPV|1|L5|A|2537
7CPV|1|L5|C|2538
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lh
- 60S ribosomal protein L35
- Chain Lj
- 60S ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- Ribosomal protein L39-like
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