J4_7CPV_008

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

7CPV|1|L5|U|3430, 7CPV|1|L5|U|3475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7CPV_008 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1256

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.2

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

7CPV|1|L5|C|3353
7CPV|1|L5|U|3354
7CPV|1|L5|G|3355
*
7CPV|1|L5|C|3409
7CPV|1|L5|G|3410
*
7CPV|1|L5|C|3428
7CPV|1|L5|U|3429
7CPV|1|L5|U|3430
7CPV|1|L5|A|3431
7CPV|1|L5|A|3432
7CPV|1|L5|G|3433
7CPV|1|L5|G|3434
7CPV|1|L5|U|3435
7CPV|1|L5|A|3436
7CPV|1|L5|G|3437
*
7CPV|1|L5|U|3471
7CPV|1|L5|G|3472
7CPV|1|L5|A|3473
7CPV|1|L5|A|3474
7CPV|1|L5|U|3475
7CPV|1|L5|G|3476

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA