J4_7CPV_013
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 7CPV|1|S2|A|673, 7CPV|1|S2|A|1084, 7CPV|1|S2|C|1086, 7CPV|1|S2|A|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7CPV_013 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.1095
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7CPV|1|S2|A|672
7CPV|1|S2|A|673
7CPV|1|S2|G|674
*
7CPV|1|S2|C|1033
7CPV|1|S2|G|1034
7CPV|1|S2|A|1035
7CPV|1|S2|A|1036
7CPV|1|S2|A|1037
7CPV|1|S2|G|1038
*
7CPV|1|S2|C|1079
7CPV|1|S2|C|1080
7CPV|1|S2|A|1081
7CPV|1|S2|U|1082
7CPV|1|S2|A|1083
7CPV|1|S2|A|1084
7CPV|1|S2|A|1085
7CPV|1|S2|C|1086
7CPV|1|S2|G|1087
7CPV|1|S2|A|1088
7CPV|1|S2|U|1089
7CPV|1|S2|G|1090
*
7CPV|1|S2|U|1161
7CPV|1|S2|U|1162
Current chains
- Chain S2
- Mus musculus 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
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