J4_7D63_001

3D structure

PDB id

7D63 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S preribosome with inactive Utp24 (state C)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.3 Å

Loop

Sequence

CAUUAAAUC*GCCC*GUAACGGG*CCGG

Length

25 nucleotides

Bulged bases

7D63|1|SA|A|105, 7D63|1|SA|C|308, 7D63|1|SA|A|359, 7D63|1|SA|C|361

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D63|1|SA|C|99
7D63|1|SA|A|100
7D63|1|SA|U|101
7D63|1|SA|U|102
7D63|1|SA|A|103
7D63|1|SA|A|104
7D63|1|SA|A|105
7D63|1|SA|U|106
7D63|1|SA|C|107
*
7D63|1|SA|G|307
7D63|1|SA|C|308
7D63|1|SA|C|309
7D63|1|SA|C|310
*
7D63|1|SA|G|357
7D63|1|SA|U|358
7D63|1|SA|A|359
7D63|1|SA|A|360
7D63|1|SA|C|361
7D63|1|SA|G|362
7D63|1|SA|G|363
7D63|1|SA|G|364
*
7D63|1|SA|C|381
7D63|1|SA|C|382
7D63|1|SA|G|383
7D63|1|SA|G|384

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SJ

40S ribosomal protein S8-A

Chain SM

40S ribosomal protein S11-A