J4_7D6Z_004

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

7D6Z|1|A|G|1271, 7D6Z|1|A|A|1272, 7D6Z|1|A|U|1273, 7D6Z|1|A|A|1275, 7D6Z|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7D6Z_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.0973

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7D6Z|1|A|C|1270
7D6Z|1|A|G|1271
7D6Z|1|A|A|1272
7D6Z|1|A|U|1273
7D6Z|1|A|A|1274
7D6Z|1|A|A|1275
7D6Z|1|A|A|1276
*
7D6Z|1|A|U|1294
7D6Z|1|A|C|1295
*
7D6Z|1|A|G|1645
7D6Z|1|A|C|1646
7D6Z|1|A|U|1647
7D6Z|1|A|U|1648
*
7D6Z|1|A|A|2009
7D6Z|1|A|G|2010

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22

Chain a

50S ribosomal protein L32