J4_7D6Z_011

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7D6Z_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0864

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7D6Z|1|A|G|2643
7D6Z|1|A|G|2644
7D6Z|1|A|G|2645
7D6Z|1|A|C|2646
*
7D6Z|1|A|G|2674
7D6Z|1|A|A|2675
7D6Z|1|A|C|2676
*
7D6Z|1|A|G|2731
7D6Z|1|A|G|2732
7D6Z|1|A|A|2733
7D6Z|1|A|A|2734
7D6Z|1|A|G|2735
*
7D6Z|1|A|U|2769
7D6Z|1|A|G|2770
7D6Z|1|A|C|2771

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14