J4_7D6Z_017
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAGUAAUG*UG*CUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7D6Z|1|f|U|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7D6Z_017 not in the Motif Atlas
- Homologous match to J4_5J7L_001
- Geometric discrepancy: 0.244
- The information below is about J4_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7D6Z|1|f|G|115
7D6Z|1|f|A|116
7D6Z|1|f|G|117
7D6Z|1|f|U|118
7D6Z|1|f|A|119
7D6Z|1|f|A|120
7D6Z|1|f|U|121
7D6Z|1|f|G|122
*
7D6Z|1|f|U|239
7D6Z|1|f|G|240
*
7D6Z|1|f|C|286
7D6Z|1|f|U|287
7D6Z|1|f|A|288
7D6Z|1|f|G|289
*
7D6Z|1|f|C|311
7D6Z|1|f|C|312
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain s
- 30S ribosomal protein S12
- Chain w
- 30S ribosomal protein S16
- Chain x
- 30S ribosomal protein S17
Coloring options: