J4_7D80_004

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGGUUCCUGUC*GGCAGGGUGAG*CU*AAUCGUACC

Length

33 nucleotides

Bulged bases

7D80|1|A|G|1341, 7D80|1|A|C|1604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|G|1309
7D80|1|A|G|1310
7D80|1|A|G|1311
7D80|1|A|U|1312
7D80|1|A|U|1313
7D80|1|A|C|1314
7D80|1|A|C|1315
7D80|1|A|U|1316
7D80|1|A|G|1317
7D80|1|A|U|1318
7D80|1|A|C|1319
*
7D80|1|A|G|1333
7D80|1|A|G|1334
7D80|1|A|C|1335
7D80|1|A|A|1336
7D80|1|A|G|1337
7D80|1|A|G|1338
7D80|1|A|G|1339
7D80|1|A|U|1340
7D80|1|A|G|1341
7D80|1|A|A|1342
7D80|1|A|G|1343
*
7D80|1|A|C|1404
7D80|1|A|U|1405
*
7D80|1|A|A|1597
7D80|1|A|A|1598
7D80|1|A|U|1599
7D80|1|A|C|1600
7D80|1|A|G|1601
7D80|1|A|U|1602
7D80|1|A|A|1603
7D80|1|A|C|1604
7D80|1|A|C|1605

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain 5

Trigger factor

Chain W

50S ribosomal protein L23