J4_7D80_007

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGCCUG*CG*CCUAAGGUAG*CGAAUGGCG

Length

27 nucleotides

Bulged bases

7D80|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|1830
7D80|1|A|G|1831
7D80|1|A|C|1832
7D80|1|A|C|1833
7D80|1|A|U|1834
7D80|1|A|G|1835
*
7D80|1|A|C|1905
7D80|1|A|G|1906
*
7D80|1|A|C|1924
7D80|1|A|C|1925
7D80|1|A|U|1926
7D80|1|A|A|1927
7D80|1|A|A|1928
7D80|1|A|G|1929
7D80|1|A|G|1930
7D80|1|A|U|1931
7D80|1|A|A|1932
7D80|1|A|G|1933
*
7D80|1|A|C|1967
7D80|1|A|G|1968
7D80|1|A|A|1969
7D80|1|A|A|1970
7D80|1|A|U|1971
7D80|1|A|G|1972
7D80|1|A|G|1973
7D80|1|A|C|1974
7D80|1|A|G|1975

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain b

50S ribosomal protein L2

Chain y

Transfer RNA; tRNA