J4_7D80_008

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAGGU*GCUUGAC*GGU*AGG

Length

20 nucleotides

Bulged bases

7D80|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|2285
7D80|1|A|G|2286
7D80|1|A|A|2287
7D80|1|A|A|2288
7D80|1|A|G|2289
7D80|1|A|G|2290
7D80|1|A|U|2291
*
7D80|1|A|G|2341
7D80|1|A|C|2342
7D80|1|A|U|2343
7D80|1|A|U|2344
7D80|1|A|G|2345
7D80|1|A|A|2346
7D80|1|A|C|2347
*
7D80|1|A|G|2370
7D80|1|A|G|2371
7D80|1|A|U|2372
*
7D80|1|A|A|2381
7D80|1|A|G|2382
7D80|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L35

Chain n

50S ribosomal protein L18

Chain u

50S ribosomal protein L27

Chain z

50S ribosomal protein L33