J4_7D80_010

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GACUCCUACGGGAGGCAG

Length

33 nucleotides

Bulged bases

7D80|1|B|A|109, 7D80|1|B|A|344, 7D80|1|B|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|B|C|58
7D80|1|B|A|59
7D80|1|B|A|60
7D80|1|B|G|61
*
7D80|1|B|C|106
7D80|1|B|G|107
7D80|1|B|G|108
7D80|1|B|A|109
7D80|1|B|C|110
7D80|1|B|G|111
7D80|1|B|G|112
7D80|1|B|G|113
*
7D80|1|B|C|314
7D80|1|B|A|315
7D80|1|B|C|316
*
7D80|1|B|G|337
7D80|1|B|A|338
7D80|1|B|C|339
7D80|1|B|U|340
7D80|1|B|C|341
7D80|1|B|C|342
7D80|1|B|U|343
7D80|1|B|A|344
7D80|1|B|C|345
7D80|1|B|G|346
7D80|1|B|G|347
7D80|1|B|G|348
7D80|1|B|A|349
7D80|1|B|G|350
7D80|1|B|G|351
7D80|1|B|C|352
7D80|1|B|A|353
7D80|1|B|G|354

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S16

Chain U

30S ribosomal protein S20

Chain j

50S ribosomal protein L14

Chain o

50S ribosomal protein L19