J4_7D80_012

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAUGGAGGGGGAUAACUACUG*CGGUAGCUAAUACCGCAUAACGU*ACCAAAGAGG*CUUGCCAUC

Length

63 nucleotides

Bulged bases

7D80|1|B|U|180, 7D80|1|B|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|B|G|138
7D80|1|B|A|139
7D80|1|B|U|140
7D80|1|B|G|141
7D80|1|B|G|142
7D80|1|B|A|143
7D80|1|B|G|144
7D80|1|B|G|145
7D80|1|B|G|146
7D80|1|B|G|147
7D80|1|B|G|148
7D80|1|B|A|149
7D80|1|B|U|150
7D80|1|B|A|151
7D80|1|B|A|152
7D80|1|B|C|153
7D80|1|B|U|154
7D80|1|B|A|155
7D80|1|B|C|156
7D80|1|B|U|157
7D80|1|B|G|158
*
7D80|1|B|C|163
7D80|1|B|G|164
7D80|1|B|G|165
7D80|1|B|U|166
7D80|1|B|A|167
7D80|1|B|G|168
7D80|1|B|C|169
7D80|1|B|U|170
7D80|1|B|A|171
7D80|1|B|A|172
7D80|1|B|U|173
7D80|1|B|A|174
7D80|1|B|C|175
7D80|1|B|C|176
7D80|1|B|G|177
7D80|1|B|C|178
7D80|1|B|A|179
7D80|1|B|U|180
7D80|1|B|A|181
7D80|1|B|A|182
7D80|1|B|C|183
7D80|1|B|G|184
7D80|1|B|U|185
*
7D80|1|B|A|192
7D80|1|B|C|193
7D80|1|B|C|194
7D80|1|B|A|195
7D80|1|B|A|196
7D80|1|B|A|197
7D80|1|B|G|198
7D80|1|B|A|199
7D80|1|B|G|200
7D80|1|B|G|201
*
7D80|1|B|C|217
7D80|1|B|U|218
7D80|1|B|U|219
7D80|1|B|G|220
7D80|1|B|C|221
7D80|1|B|C|222
7D80|1|B|A|223
7D80|1|B|U|224
7D80|1|B|C|225

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S16

Chain U

30S ribosomal protein S20

Chain o

50S ribosomal protein L19