J4_7D80_013
3D structure
- PDB id
- 7D80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- CGUAAAGCG*CGAAAG*CCGUAAACGAUGU*ACCG
- Length
- 32 nucleotides
- Bulged bases
- 7D80|1|B|A|572, 7D80|1|B|C|576, 7D80|1|B|U|813, 7D80|1|B|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D80|1|B|C|569
7D80|1|B|G|570
7D80|1|B|U|571
7D80|1|B|A|572
7D80|1|B|A|573
7D80|1|B|A|574
7D80|1|B|G|575
7D80|1|B|C|576
7D80|1|B|G|577
*
7D80|1|B|C|764
7D80|1|B|G|765
7D80|1|B|A|766
7D80|1|B|A|767
7D80|1|B|A|768
7D80|1|B|G|769
*
7D80|1|B|C|810
7D80|1|B|C|811
7D80|1|B|G|812
7D80|1|B|U|813
7D80|1|B|A|814
7D80|1|B|A|815
7D80|1|B|A|816
7D80|1|B|C|817
7D80|1|B|G|818
7D80|1|B|A|819
7D80|1|B|U|820
7D80|1|B|G|821
7D80|1|B|U|822
*
7D80|1|B|A|878
7D80|1|B|C|879
7D80|1|B|C|880
7D80|1|B|G|881
Current chains
- Chain B
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 30S ribosomal protein S8
- Chain M
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S15
- Chain R
- 30S ribosomal protein S17
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