J4_7D80_015

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCAG*CGAUGAGUAG*UGAAUAUG*CAAG

Length

26 nucleotides

Bulged bases

7D80|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|268
7D80|1|A|C|269
7D80|1|A|A|270
7D80|1|A|G|271
*
7D80|1|A|C|366
7D80|1|A|G|367
7D80|1|A|A|368
7D80|1|A|U|369
7D80|1|A|G|370
7D80|1|A|A|371
7D80|1|A|G|372
7D80|1|A|U|373
7D80|1|A|A|374
7D80|1|A|G|375
*
7D80|1|A|U|399
7D80|1|A|G|400
7D80|1|A|A|401
7D80|1|A|A|402
7D80|1|A|U|403
7D80|1|A|A|404
7D80|1|A|U|405
7D80|1|A|G|406
*
7D80|1|A|C|421
7D80|1|A|A|422
7D80|1|A|A|423
7D80|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain v

50S ribosomal protein L28