J4_7D80_016

3D structure

PDB id

7D80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase, trigger factor, and methionine aminopeptidase

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAUAAAGCG*CGCUC*GCUU*AG

Length

21 nucleotides

Bulged bases

7D80|1|A|G|1271, 7D80|1|A|A|1272, 7D80|1|A|U|1273, 7D80|1|A|A|1274, 7D80|1|A|C|1646, 7D80|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D80|1|A|C|1270
7D80|1|A|G|1271
7D80|1|A|A|1272
7D80|1|A|U|1273
7D80|1|A|A|1274
7D80|1|A|A|1275
7D80|1|A|A|1276
7D80|1|A|G|1277
7D80|1|A|C|1278
7D80|1|A|G|1279
*
7D80|1|A|C|1291
7D80|1|A|G|1292
7D80|1|A|C|1293
7D80|1|A|U|1294
7D80|1|A|C|1295
*
7D80|1|A|G|1645
7D80|1|A|C|1646
7D80|1|A|U|1647
7D80|1|A|U|1648
*
7D80|1|A|A|2009
7D80|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L32

Chain m

50S ribosomal protein L17

Chain r

50S ribosomal protein L22