J4_7DUJ_001
3D structure
- PDB id
- 7DUJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7DUJ|1|A|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7DUJ_001 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.083
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7DUJ|1|A|G|115
7DUJ|1|A|A|116
7DUJ|1|A|G|117
7DUJ|1|A|U|118
7DUJ|1|A|A|119
7DUJ|1|A|A|120
7DUJ|1|A|C|121
7DUJ|1|A|G|122
*
7DUJ|1|A|U|239
7DUJ|1|A|C|240
*
7DUJ|1|A|G|286
7DUJ|1|A|U|287
7DUJ|1|A|A|288
7DUJ|1|A|G|289
*
7DUJ|1|A|C|311
7DUJ|1|A|C|312
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
- Chain Q
- 30S ribosomal protein S17
Coloring options: