J4_7DUJ_003
3D structure
- PDB id
- 7DUJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 7DUJ|1|A|A|815, 7DUJ|1|A|C|817, 7DUJ|1|A|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7DUJ_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.0762
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7DUJ|1|A|G|575
7DUJ|1|A|G|576
7DUJ|1|A|G|577
*
7DUJ|1|A|C|764
7DUJ|1|A|G|765
7DUJ|1|A|A|766
7DUJ|1|A|A|767
7DUJ|1|A|A|768
7DUJ|1|A|G|769
*
7DUJ|1|A|C|810
7DUJ|1|A|C|811
7DUJ|1|A|C|812
7DUJ|1|A|U|813
7DUJ|1|A|A|814
7DUJ|1|A|A|815
7DUJ|1|A|A|816
7DUJ|1|A|C|817
7DUJ|1|A|G|818
7DUJ|1|A|A|819
7DUJ|1|A|U|820
7DUJ|1|A|G|821
*
7DUJ|1|A|C|879
7DUJ|1|A|C|880
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: