J4_7DUK_001

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

7DUK|1|A|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7DUK_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0747

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7DUK|1|A|G|115
7DUK|1|A|A|116
7DUK|1|A|G|117
7DUK|1|A|U|118
7DUK|1|A|A|119
7DUK|1|A|A|120
7DUK|1|A|C|121
7DUK|1|A|G|122
*
7DUK|1|A|U|239
7DUK|1|A|C|240
*
7DUK|1|A|G|286
7DUK|1|A|U|287
7DUK|1|A|A|288
7DUK|1|A|G|289
*
7DUK|1|A|C|311
7DUK|1|A|C|312

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17