J4_7F0D_002

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*UGCC*GAC*GGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7F0D_002 not in the Motif Atlas

Homologous match to J4_4WF9_002

Geometric discrepancy: 0.1226

The information below is about J4_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

7F0D|1|A|G|379
7F0D|1|A|G|380
7F0D|1|A|A|381
7F0D|1|A|A|382
7F0D|1|A|G|383
*
7F0D|1|A|U|399
7F0D|1|A|G|400
7F0D|1|A|C|401
7F0D|1|A|C|402
*
7F0D|1|A|G|406
7F0D|1|A|A|407
7F0D|1|A|C|408
*
7F0D|1|A|G|420
7F0D|1|A|G|421
7F0D|1|A|U|422
7F0D|1|A|A|423
7F0D|1|A|C|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24