J4_7F0D_007

3D structure

PDB id

7F0D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

7F0D|1|A|U|2209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7F0D_007 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.1822

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7F0D|1|A|C|2067
7F0D|1|A|U|2068
7F0D|1|A|G|2069
*
7F0D|1|A|C|2143
7F0D|1|A|G|2144
*
7F0D|1|A|C|2162
7F0D|1|A|C|2163
7F0D|1|A|U|2164
7F0D|1|A|A|2165
7F0D|1|A|A|2166
7F0D|1|A|G|2167
7F0D|1|A|G|2168
7F0D|1|A|U|2169
7F0D|1|A|A|2170
7F0D|1|A|G|2171
*
7F0D|1|A|C|2205
7F0D|1|A|G|2206
7F0D|1|A|A|2207
7F0D|1|A|A|2208
7F0D|1|A|U|2209
7F0D|1|A|G|2210

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2