J4_7F5S_008

3D structure

PDB id

7F5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

human delta-METTL18 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*A(PSU)GA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7F5S_008 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.2043

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7F5S|1|L5|G|3634
7F5S|1|L5|A|3635
7F5S|1|L5|C|3636
7F5S|1|L5|PSU|3637
7F5S|1|L5|G|3638
*
7F5S|1|L5|C|3650
7F5S|1|L5|A|3651
7F5S|1|L5|A|3652
7F5S|1|L5|A|3653
7F5S|1|L5|G|3654
*
7F5S|1|L5|U|3690
7F5S|1|L5|G|3691
7F5S|1|L5|A|3692
7F5S|1|L5|U|3693
7F5S|1|L5|U|3694
*
7F5S|1|L5|A|3821
7F5S|1|L5|PSU|3822
7F5S|1|L5|G|3823
7F5S|1|L5|A|3824
7F5S|1|L5|A2M|3825
7F5S|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a