J4_7JQL_001

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7JQL|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQL_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0686

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7JQL|1|1A|C|268
7JQL|1|1A|U|269
*
7JQL|1|1A|G|370
7JQL|1|1A|A|371
7JQL|1|1A|G|372
7JQL|1|1A|U|373
7JQL|1|1A|A|374
7JQL|1|1A|C|375
*
7JQL|1|1A|G|399
7JQL|1|1A|G|400
7JQL|1|1A|A|401
7JQL|1|1A|A|402
7JQL|1|1A|U|403
7JQL|1|1A|C|404
7JQL|1|1A|U|405
7JQL|1|1A|G|406
*
7JQL|1|1A|U|421
7JQL|1|1A|A|422
7JQL|1|1A|A|423
7JQL|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9