J4_7JQM_011
3D structure
- PDB id
- 7JQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.05 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 7JQM|1|1a|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_7JQM_011 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0858
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7JQM|1|1a|G|115
7JQM|1|1a|A|116
7JQM|1|1a|G|117
7JQM|1|1a|U|118
7JQM|1|1a|A|119
7JQM|1|1a|A|120
7JQM|1|1a|C|121
7JQM|1|1a|G|122
*
7JQM|1|1a|U|239
7JQM|1|1a|C|240
*
7JQM|1|1a|G|286
7JQM|1|1a|U|287
7JQM|1|1a|A|288
7JQM|1|1a|G|289
*
7JQM|1|1a|C|311
7JQM|1|1a|C|312
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
- Chain 1q
- 30S ribosomal protein S17
Coloring options: