J4_7JQM_015

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

7JQM|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQM_015 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0986

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

7JQM|1|2A|C|268
7JQM|1|2A|U|269
*
7JQM|1|2A|G|370
7JQM|1|2A|A|371
7JQM|1|2A|G|372
7JQM|1|2A|U|373
7JQM|1|2A|A|374
7JQM|1|2A|C|375
*
7JQM|1|2A|G|399
7JQM|1|2A|G|400
7JQM|1|2A|A|401
7JQM|1|2A|A|402
7JQM|1|2A|U|403
7JQM|1|2A|C|404
7JQM|1|2A|U|405
7JQM|1|2A|G|406
*
7JQM|1|2A|U|421
7JQM|1|2A|A|422
7JQM|1|2A|A|423
7JQM|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9