J4_7JQM_018

3D structure

PDB id

7JQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-002, mRNA, and deacylated P-site tRNA at 3.05A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

7JQM|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JQM_018 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0775

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7JQM|1|2A|G|1310
7JQM|1|2A|G|1311
7JQM|1|2A|U|1312
7JQM|1|2A|U|1313
7JQM|1|2A|C|1314
*
7JQM|1|2A|G|1338
7JQM|1|2A|G|1339
7JQM|1|2A|U|1340
7JQM|1|2A|U|1341
7JQM|1|2A|A|1342
7JQM|1|2A|G|1343
*
7JQM|1|2A|C|1404
7JQM|1|2A|U|1405
*
7JQM|1|2A|A|1597
7JQM|1|2A|C|1598
7JQM|1|2A|C|1599
7JQM|1|2A|C|1600
7JQM|1|2A|G|1601
7JQM|1|2A|U|1602
7JQM|1|2A|A|1603
7JQM|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23