J4_7JSS_001

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

7JSS|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_7JSS_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1552

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

7JSS|1|1|C|268
7JSS|1|1|C|269
*
7JSS|1|1|G|370
7JSS|1|1|A|371
7JSS|1|1|G|372
7JSS|1|1|U|373
7JSS|1|1|A|374
7JSS|1|1|G|375
*
7JSS|1|1|U|399
7JSS|1|1|G|400
7JSS|1|1|A|401
7JSS|1|1|A|402
7JSS|1|1|U|403
7JSS|1|1|A|404
7JSS|1|1|U|405
7JSS|1|1|G|406
*
7JSS|1|1|C|421
7JSS|1|1|A|422
7JSS|1|1|A|423
7JSS|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28