3D structure

PDB id
7JSS (explore in PDB, NAKB, or RNA 3D Hub)
Description
ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
7JSS|1|1|G|1271, 7JSS|1|1|A|1272, 7JSS|1|1|U|1273, 7JSS|1|1|A|1275, 7JSS|1|1|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_7JSS_003 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.1475
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

7JSS|1|1|C|1270
7JSS|1|1|G|1271
7JSS|1|1|A|1272
7JSS|1|1|U|1273
7JSS|1|1|A|1274
7JSS|1|1|A|1275
7JSS|1|1|A|1276
*
7JSS|1|1|U|1294
7JSS|1|1|C|1295
*
7JSS|1|1|G|1645
7JSS|1|1|C|1646
7JSS|1|1|U|1647
7JSS|1|1|U|1648
*
7JSS|1|1|A|2009
7JSS|1|1|G|2010

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L32
Chain n
50S ribosomal protein L17
Chain s
50S ribosomal protein L22

Coloring options:


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